U1 Biochemistry

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Biology

12th

44 Terms

1

molecule

  • 2 or more chemical elements make up a molecule

  • smallest unit of a substance that retains chemical & physical properties of the substance

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2

organic molecule

carbon-based; carbon atoms typically bonded together

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3

intramolecular forces

forces within a molecule

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4

types of intramolecular forces

  • ionic

  • polar covalent

  • non-polar covalent

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5

covalent bond

forms when valence electrons of 2 non-metal atoms are shared so that both may have a full valence shell

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6

electronegativity

ability of an atom to attract electrons stronger to other atoms (e.g oxygen, nitrogen, chlorine)

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7

dipole

a bond or molecule whose ends have opposite charges

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8

ionic

when a metal loses electrons and non-metal gains the electrons

cation - positive ion (metal)

anion - negative ion (non-metal)

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9

non-polar covalent

covalent bond w/ electrons being shared equally, both atoms do not possess a positive or negative charge

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10

polar covalent

covalent bond w/ electrons being attracted to the atom of higher electronegativity (making it slightly more negative and the other atom slightly more positive)

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11

intermolecular forces

  • forces between molecules or between different parts of a molecule (if it’s large enough)

  • weaker than intramolecular forces

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12

hydrogen bond

  • atom of a molecule being attracted to an atom of another molecule due to differing polarity

e.g positive hydrogen atom of a water molecule being attracted to negative oxygen atom of a water molecule

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13

hydrophobic effect

tendency of non-polar molecules to clump together in substances

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14

hydrophobic interaction

non-polar molecules are unable to form hydrogen bonds with other polar molecules

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15

hydrophilic interaction

polar molecules are able to form hydrogen bonds w/ water molecules

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16

ions

  • an atom or group of atoms that loses or gains an electron to obtain a stable valence shell

  • has an electrical charge

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17

cation

  • an atom that has lost an electron

  • positively charged

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18

anion

  • an atom that has gained an electron

  • negatively charged

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19

molecular formula

shows the # of each type of atom in an element or compound

e.g C6H12O6

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20

structural formula

  • a diagram of a molecule that shows how atoms of the molecule are bonded together

  • lines drawn between atoms indicate covalent bonds

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21

biochemical reaction

normally involves a combination of more than one

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22

4 main chemical reactions biological molecules undergo

neutralization

oxidation-reduction

condensation

hydrolysis

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23

acid

  • substance that produces hydrogen ions (H^+) when it dissolves in water

  • increases concentration of ions in an aqueous solution

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24

base

  • substance that produces hydroxide ions when it (OH^-) when it dissolves in water

  • increases concentration of hydroxide ions

  • can be thought of as a substance that accepts or reacts with hydrogen ions

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25

pH scale

ranking of substances according to the relative concentration of their hydrogen ions

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26

neutralization

  • acid-base reaction

  • acid interacts w/ a base resulting in salt (ionic compound) & water

  • both acid & base lose their acidic & base properties respectively

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27

buffers

substances that minimize changes in pH by donating or accepting hydrogen ions as needed

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28

oxidation

when a molecule loses an electron & becomes oxidized

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29

reduction

when a molecule accepts electrons from an oxidized molecule

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30

oxidation-reduction

  • oxidation & reduction occurs at the same time so the whole reaction is termed this

  • redox reaction

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31

condensation

  • hydrogen is removed from a functional group on one molecule

  • an OH group is removed from another molecule

  • the 2 molecules bond and form a larger molecule & water

  • all 4 types of biological macromolecules involve this reaction between the monomers of each polymer

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32

hydrolysis

  • breaks down macromolecules into monomers in cells

  • hydrogen from water is added to one monomer

  • an OH group is added to another monomer beside it

  • covalent bond between these 2 monomers breaks & the larger molecule is split into 2 smaller molecules

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33

isomer

a molecule with the same molecular formula but different structure

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34

monomer

molecule that can bond to other identical molecules to form a polymer

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35

polymer

molecule made of multiple monomers

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36

4 main types of macromolecules

carbohydrates

lipids

proteins

nucleic acid

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37

carbohydrates

  • contains carbon, hydrogen and oxygen

  • easy-to-access energy

  • polar; soluble in water

  • e.g sugar & starches

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38

types of carbohydrates

monosaccharide

disaccharide

polysaccharide

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39

glycosidic linkage

covalent bond b/w 2 monosaccharides

forms b/w specific hydroxyl groups on each mono saccharide

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40

hexose

  • 6 carbon sugar

  • A glucose, B glucose, galactose, fructose

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41

pentose

  • 5 carbon sugar

  • ribose, deoxyribose

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42

monosaccharide

  • C atoms in molecule 3-7

  • composed of a single carbon-based monomer

  • a monomer for other carbohydrates

  • A glucose, B glucose, galactose, fructose

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43

disaccharide

  • 2 monosaccharides covalently bonded

  • maltose, sucrose, lactose

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44

polysaccharide

monosaccharides joined together by glycosidic linkage

starch, glycogen, cellulose

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