Biological Molecules

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What do carbohydrates contain?

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What do carbohydrates contain?

Carbon, Hydrogen and oxygen. They are 'hydrated carbon' meaning for every carbon there are two hydrogen atoms and one oxygen atom.

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What is the function of carbohydrates?

They are three-fold. They act as a source of energy ( glucose) , a store of energy (starch and glycogen) and as structural units (cellulose)

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What are the three main groups of carbohydrates?

Monosaccharides , disaccharides and polysaccharides.

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What are monosaccharides?

They are the simplest carbohydrates, they are a source of energy. They are sugars.

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Where are monosaccharides soluble?

Monosaccharides are soluble in water, and are insoluble non-polar solvents.

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What is the chemical arrangement of monosaccharides?

They have a backbone of single bonded carbon atoms, with one double-bonded oxygen- carbonyl group.

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Hexose sugars have...

6 carbon atoms and exist in rings

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Pentose sugars have...

5 carbon atoms exist in rings

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Triose sugars have...

3 carbon atoms and exist in straight chain

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What is glucose?

Glucose is a monosaccharide hexose sugar, they are monomers that can bond to form disaccharides and polysaccharides.

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What are disaccharides?

-They are when two monosaccharides join together. When they join a condensation reaction occurs to form a glycosidic bond.

  • A glycosidic bond is when a water molecule is removed leaving an oxygen acting as a link between the two monosaccharides.

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How are disaccharides broken?

They are broken by hydrolysis , the addition of water. The water provides the hydroxyl group and a hydrogen , which helps the glycosidic bond to break.

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What is a-glucose + a-glucose

maltose

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What is a-glucose + sucrose

sucrose

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What is b-glucose + a-glucose

lactose

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What sugar is hexose and what is their role?

-a-glucose: energy source and component of starch and glycogen acting as energy stores -b-glucose component of cellulose for structural support in plants.

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What sugar is a pentose and what is their role?

Ribose : component of ribonucleic acid (RNA) ,ATP and NAD. Chemical formula: C5H10O5

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What are polysaccharides?

They are polymers of monosaccharides

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How are polysaccharides made into energy stores?

-Joining lots of glucose molecules together into polysaccharides can create a store of energy. -Examples of energy stores: starch in plants in chloroplast. Glycogen in cells of liver and muscle cells.

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What is starch and chloroplast made up of?

Amylose and amylopectin

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Why are polysaccharides less soluble in water than monosaccharides?

-They have a larger size,the amylose may form a double helix structure which is hydrophobic. -Furthermore, if many water molecules did dissolve in cytoplasm , the water potential would decrease and excess water would diffuse in.

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What are 3 examples of polysaccharides?

-Amylose (plants)- forms long chains of a-glucose and have glycosidic bonds between carbon 1-4. -Amylopectin (plants) - forms a-glucose with glycosidic carbon bonds 1-4. But has branches between carbon 1-6. -Glycogen (in animals) : like amylopectin , it has carbon 1-4 bonds and branches formed by glycosidic bo

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What is cellulose ?

It's a homopolysaccharide made from long chains made from long chains of up to 15000 b-glucose molecules bonded together through a condensation reaction to form glycosidic bonds

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How are glycosidic bonds formed?

It's formed by the removal of water , a condensation reaction.

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What are cellulose beta glucose like?

-Cellulose chains are straight and lie side by side. -The hydrogen and hydroxyl groups on carbon 1 are inverted compared to a-glucose -The hydrogen bond is rotated - gives additional strength and stops spiralling -Hydroxyl groups on carbon 2 sticks out , enabling hydrogen bonds to be formed between them

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What is the arrangement of cellulose chains?

The microfibrils are embedded in pectins to form the wall Macrofibrils run in all directions criss-crossing the wall for extra strength

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What is the structure of plant cell walls?

-microfibrils and Macrofibrils have very high tensile strength due to glycosidic bonds and hydrogen bonds -Microfibrils run in all directions cross-crossing the wall for extra strength -It is difficult to digest cellulose - due to its glycosidic bonds

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What is the function of plant cell walls?

-each cell provides strength as plants don't have a rigid skeleton -There is a space between Macrofibrils for water and mineral ions to pass into and out of the cell. Making cell fully permeable -Cell had high tensile strength , prevents cell from bursting when turgid -Macrofibril reinforced with other substances , eg lignin, makes cell wall waterproof

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What are bacterial cell walls like?

The cell wall is not made of cellulose but peptidoglycan, lie in parallel , cross linked by short peptide chains

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What are lipids?

-lipids contain C,H,O -They are insoluble in water as they aren't polar -They dissolve in alcohol -The three most important lipids are : triglycerides, steroids and phospholipids -They are examples of macromolecules

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What are triglyceride's structure

1 glycerol backbone with 3 fatty acid tails.

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What is glycerol

Glycerol has 3 carbon atoms. It is an alcohol so it has 3-OH , which are important to the structure of triglycerides

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33

What are fatty acids?

They have a carboxyl group (-COOH) on one end, attached to a hydrocarbon tail. The carbon chains can be up to 2-20 carbons long. The carboxyl group ionises into H+ and COO- groups. Therefore this is an acid due to free H+ ions.

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What are saturated fatty acids like?

-no C=C Bonds in molecule -Forms straight chains -solid at room temperature , high melting point

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What are single C=C bonds called?

monounsaturated

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What are more than one C=C called?

polyunsaturated

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What are unsaturated fatty acids like?

-Forms a kink in the chain where double bond is -These kinks push the molecules apart slightly, making them more fluid. -more unsaturated fatty acids , the lower the melting point

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How are ester bonds formed?

-Condensation reaction happens between the -COOH group of fatty acids and the -OH group of the glycerol. -Due to the 3 -OH group, three fatty acids will bond. A water molecule is produced and the covalent bond, the ester bond

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What are the functions of triglycerides?

-Energy source - Triglycerides are broken down in respiration to release energy and generate ATP. -The ester bonds are hydrolysed and then glycerol and fatty acids can be broken down completely -Triglycerides are insoluble in water- so can be stored without affecting the water potential -Insulation - Adipose in whales (blubber), lipid in nerve cells act as an electrical insulator, animals prepare for hibernation -Buoyancy - fat is less dense than water so used by aquatic molecules to help them float Protection - protect vital organs .

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What is the structure of phospholipid?

-glycerol, two fatty acids, and a phosphate group -One of the three -OH groups on the glycerol forms an ester bond by a condensation reaction -2 hydrophobic tails and hydrphilic head (due to the charged phosphate making it polar)

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What are examples of steroid hormones and what are they made from?

-Testosterone, oestrogen, vitamin D are all made from cholesterol -They are small and hydrophobic so they can pass through the cell membrane and any other membrane inside the cell. -Steroid hormones are abundant in plants and in ingestion and absorption some can be converted into animal hormones.

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Where is cholesterol made?

Liver

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How are ester bonds broken?

hydrolysis reaction

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What are amino acids?

Monomers of all proteins , and all amino acids have the same basic structure 

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What are peptide bonds?

A bond formed when two amino acids are joined by a condensation reaction

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What are proteins?

Proteins are large polymers of long chain amino acids.

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What properties of amino acids give them a variety of functions?

  • They form structural components of animals in particular like muscles

  • Their tendency to adopt specific shapes in  enzymes , antibodies and some hormones

  • Membranes have protein constituents that act as carries and pores for active transport and facilitated diffusion 

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What elements do amino acids contain?

C,H,O,N and sometimes sulphur

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What does each protein chain of amino acids have?

Amine group (-NH2) at one end and a carboxyl (-COOH) group at the other end


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50

What do the names of almost all amino acids end in?

-ine 

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51

The R group does not stand for ……..

A particular element

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What is the element in glycine in the R group?

H

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53

How do amino acids act as a buffer?

When dissolved in water , the amine group and carboxyl group can ionise.

The amine group can accept an H+ ion to change from NH2 to NH3+ . The carboxyl group can give up an H+ ion to change from COOH to COO-


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54

What are peptide bonds and what type of bond are they?

Amino acids are joined together by peptide bonds 

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How are peptide bonds made?

They are made by condensation reactions

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How are peptide bonds broken?

They are broken by hydrolysis 

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How do the making and breaking of peptide bonds occur and give an example?

Enzymes catalyse the reaction of peptide bonds.

For example protease enzymes break peptide bonds during digestion. They also break down protein hormones so their effects are not permanent.

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58

Draw the bond of amino acids + amino acids to form dipeptide molecules and water 

Draw the hydrolysis of dipeptide molecules to form two amino acids

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What are two amino acids joined together?

Dipeptides

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What are multiple amino acids together?

Polypeptides 

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What is the definition of the primary structure of proteins?

The sequence of amino acids found in a molecule

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What is the definition of tertiary protein structure and its boding?

The overall 3D shape of a protein molecule. Its shape arises due to interactions including hydrogen bonding, disulfide bridges,ionic bonds, and hydrophobic interactions

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Why is the number and order of amino acids important?

Changing just one amino acid can alter the function of the protein

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64

How many possible ways are there of ordering amino acids?

There are 20100 possible ways of ordering amino acids

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65

The order of amino acids in the primary structure will determine its shape in the………

Secondary, tertiary and quaternary structure

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66

In the secondary structure are the shapes of amino acids twisted or straight.

They are twisted 

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What are secondary structure proteins twisted into and what are they held together by?

  • They are twisted into a-helix coil with 36 amino acids per 10 turns of the helix.

  • They are held together by hydrogen bonds between -NH on one amino acid and -CO group on another further down the strand

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Why are the a-helix and b-pleated sheets stable at optimal temperature and pH even though they have hydrogen bonds in secondary structure protein?

Many hydrogen bonds are formed 

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